Articles Written By: emae2021@pomona.edu

Sagecast The Podcast of Pomona College

The first season of Sagecast, titled “Backstories,” features Pomona faculty members discussing how they came to study what they study, teach what they teach and love the field they love. Sagecast offers our extended community a chance to listen in on vibrant intellectual conversations—whether on the train, in the car, at the gym or at home. Listen at Pomona College Sagecast or look us up on the podcast sites of Apple, Google or Spotify. Here’s a look at season 1:

Episode 1
Nicole Holliday
Linguistics & Cognitive Science
How does language build our own identities and vice versa?

Episode 2
Miguel Tinker Salas
History & Latin American Studies
Oil and politics: Growing up in Venezuela

Episode 3
Erica Dobbs
Politics
Citizenship as it relates to immigration and social protections

Episode 4
Lynne Miyake
Japanese
Japanese literature: From the Tales of Genji to Manga

Episode 5
Kevin Dettmar
English
The beginnings of literature and rock and roll

Episode 6
Guillermo Douglass-Jaimes
Environmental Analysis
When the environment, technology and public health tell untold stories

Episode 7
Gizem Karaali
Math
Math, the liberal arts, and math education

Episode 8
Tony Shay
Dance
The politics of choreography and dance

Episode 9
Lupe Bacio
Psychology & Chicana/o-Latina/o Studies
Addiction among immigrant communities

Episode 10
Sandeep Mukherjee
Art
How an industrial engineer became an artist

Episode 11
Genevieve Lee
Music
The life of a concert pianist

Episode 12
Nicole Weekes
Neuroscience
The physical and psychological sides of stress

Farm to Table at the Sagehen Café

farm-to-table specialIt’s Friday, and this week’s farm-to-table special at the Sagehen Café is a vegetable and mushroom risotto with organic beets, carrots, joi choi, zucchini, yellow squash, garlic and onions, most of it grown and harvested nearby at the Pomona College Organic Farm. For the past five years, the on-campus restaurant, housed in Pomona’s Smith Campus Center, has offered a Friday special made with fresh, organic ingredients from the student-run farm. If you want to try it, though, you may need to arrive early, because according to the café’s general manager, Cheryl Yarck, it usually sells out.

Pomona Partners Turns 25

Danny DeBare ’22 engages in a community-building exercise with Fremont Academy students.

Danny DeBare ’22 engages in a community-building exercise with Fremont Academy students.

Every Friday at 3 p.m., after the school bell signals the end of the school day, about 30 middle school students at Fremont Academy in the city of Pomona make their way to the cafeteria. The students are not ready to go home just yet—they’re sticking around for Pomona Partners.

Pomona Partners, the College’s longest-running community engagement program, turned 25 last fall. The program continues today through the Draper Center for Community Partnerships, with more than a dozen Pomona College students volunteering every semester to host a series of  activities and experiences with seventh- and eighth-graders.

This academic year, the focus is on critical environmental justice. Students also engage in conversations on other topics, like student activism as a result of school shootings, and share on-campus activities like games, videos, acting workshops, one-on-one interactions and group interactions, as well as two annual field trips, including one to the Pomona College campus.

BY THE NUMBERS: The Class of 2023

In keeping with recent tradition, on the mid-March day that the College sent out acceptance letters to a new class of Pomona students, the staff of Pomona’s Offices of Admissions and Financial Aid rang the Sumner Hall bell 23 times to celebrate the Class of 2023. Here are a few facts about the new group of Sagehens:

726 first-year students admitted to the College

26 transfer students admitted, including 10 from community colleges

49 U.S. states represented, plus the District of Columbia and Puerto Rico

47 countries represented

57.9% of class are domestic students of color

13.5% of the class are international students

20.3% of the class are first-generation students

9 are military veterans, representing the Air Force, Army and Marine Corps

6 participated in the Pomona College Academy for Youth Success (PAYS)

Archiving Historic Costumes

Historic CostumesTucked away inside the costume shop of Pomona’s Seaver Theatre is a collection of more than 150 historic garments—mostly women’s clothing dating from the 1920s to the 1950s. They’ve been used over the years, and many have grown delicate with age.

That caught the attention of Michael Mao ’19, a history major and theatre minor with an interest in costume design. With Theatre Professor Sherry Linnell serving as his advisor, Mao decided to combine his fields of study with a research project that encompassed two summers, culminating in the creation of a digital archive of the garments.

Mao spent much of the first summer of his project, in 2017, researching the background of the garments and comparing them to historical catalogs and books about typical women’s fashion of the times. He also noted, whenever possible, important details such as style, fabric, construction and trim.

The next step was photography of the garments. Linnell wanted Mao to consider them as three-dimensional objects, much like sculptures. This posed a challenge for Mao, who enlisted the help of Instructional Technologist Jason Smith.

Smith helped him acquire the necessary equipment—a manual camera with a timer, kit light reflectors and lightboxes—and together they assembled a pop-up studio with white and black backdrops against which to photograph the clothing.

Each garment was photographed from the front, back and sides in quarter turns, with additional photographs for interesting details or trims. After taking the photos, Smith spent time editing them to ensure their visual quality.

The digital image database will serve as a lasting resource for theatre and dance students to continue to engage with these historic garments, even though many of them have grown too delicate to pull out in person.

Emerging Playwright: Mary Kamitaki ’15

Mary Kamitaki ’15Mary Kamitaki ’15 started doing theatre when she was little, a budding “backyard” playwright, performing plays based on fairy tales with her friends, complete with a bedsheet as a stage curtain. The curtain didn’t close in her childhood — and it’s not closing anytime soon. Now the play she wrote, “Southernmost,” is running at the Playwright’s Arena Theatre in Los Angeles, her first professional production.

Kamitaki’s “Southernmost” is about a coffee farmer in rural Hawaii and his daughter who returns home for the first time in years with her girlfriend. Shortly after she arrives, their home is threatened by a lava flow and they have to decide to abandon their land or stand their ground. Critics have noted the emerging playwright’s talent.

Stage and Cinema writes, “Kamitaki constructs the play with a sure sense of place and character.” “Audiences can rest assured that while “Southernmost” is in town, 80 minutes of entertaining, engaging theater are a sure bet on the Playwrights’ Arena stage,” reviews Stage Scene L.A.

While Kamitaki’s childhood in Hawaii suggested stage promise and combined her two favorite things, reading and playing, her double major at Pomona may come as a surprise: math and media studies. For Kamitaki, a liberal arts education made life bigger, not smaller. She says it allowed her to pursue all the things she was interested in and helped her find the path to playwriting. Kamitaki had never actually written for theatre until she came to college.

“It wasn’t until my senior year that I figured out what I wanted to do. But the other disciplines I studied in the meantime were fulfilling and continue to deepen my understanding and appreciation of the theatre world now.”

While the disciplines she studied were disparate, she says, “I do think there’s a kind of mathematical way I approach playwriting and dramaturgy now in terms of the flow of logic and framing of ideas and worlds.”

While at Pomona, Kamitaki took a writing class with the late Professor of Theatre Art Horowitz who introduced her to contemporary theatre and gave her the space to explore dramatic writing, she says. Before that class she never really knew there were still people alive writing plays.

“I knew about people like Shakespeare and Chekhov, but no living playwrights, and I had never even considered writing to be a real option for my future.”

Professor of Theatre Giovanni Ortega was another major influence during her time at Pomona. He directed her in “Spring Awakening” her senior year and taught a directing class she took. Kamitaki says he reignited her love for theatre and showed her it was possible to be a working theatre artist.

That real possibility became a real pursuit. Immediately after graduating from Pomona, Kamitaki went to USC for graduate school to study dramatic writing, which included playwriting and screenwriting. Since completing the program last year, she has been working and writing with New West, Ensemble Studio Theatre/LA.

The writing process is constantly evolving for Kamitaki. Usually she starts with a character or a world. In the case of “Southernmost” she started with a language: Pidgin, also known as Hawaiian Creole English. She says that for her everything serves as inspiration. Family. Relationships. Reality TV. Whatever’s bothering or scaring her or making her mad, she says. Reading new work from fellow writers also pushes her to go further and reach higher.

Kamitaki calls the experience of seeing her work on stage as both exciting and “kind of bizarre.”

“This play, in particular, is very personal, and seeing it designed, directed, built and performed by other people—and then witnessed by an audience—is kind of like having an out-of-body experience. It’s very fulfilling but also kind of disorienting.”

Back to the Hot Zone

Back to the Hot Zone pane
Julianna Margulies stars as Nancy Jaax in the National Geographic Channel miniseries The Hot Zone

Julianna Margulies stars as Nancy Jaax in the National Geographic Channel miniseries The Hot Zone, to air beginning May 27.

Richard Preston ’76

Richard Preston ’76

JODIE FOSTER WAS SET TO STAR. Robert Redford was on board. Ridley Scott would direct. And then it all fell apart. It was the 1995 blockbuster that never was, and it has bound together two Pomona College alumni for more than 25 years, even though Hollywood producer Lynda Obst ’72 and author Richard Preston ’76 had never met before Obst read the 1992 story in The New Yorker that became the basis of Preston’s nonfiction bestseller The Hot Zone.

Their twisting journey reaches its destination on Memorial Day, when the six-episode limited series The Hot Zone, starring Julianna Margulies, premieres on the National Geographic Channel. A quest that began when Preston was 38 and Obst was 42 is ending in triumph with both old enough to draw Social Security.

Lynda Obst ’72

Lynda Obst ’72

“The article set the town on fire from the moment it was published,” Obst says of Preston’s New Yorker story, while sitting in the office of her hillside home in the Silver Lake neighborhood of Los Angeles. “Everyone went insane and had to have it. And I was one of those people.”

By early 1993, Obst had won the rights to Preston’s terrifying true tale about the threat of Ebola and other deadly viruses on U.S. soil. But she lost the agonizing war after Foster pulled out over script differences and rival producer Arnold Kopelson raced into filming a blatant knockoff, the 1995 movie Outbreak, despite failing to secure the rights from Preston.

It was a defeat so painful, so public for Obst—who already had Sleepless in Seattle to her credit and later added Contact and Interstellar—that she made its lessons the first chapter of her 1996 memoir about navigating Hollywood, Hello, He Lied.

“The pressure can crush you or turn you into the diamond version of yourself: hard and brilliant,” she wrote about the necessity of moving on. Yet in the midst of the chapter “Next!” about the ephemeral nature of both defeat and success, she slipped in a caveat: “Reinvention remains an option.”

Reinvention it would be: Last September, The Hot Zone began filming in Toronto, followed by a December shoot in South Africa, a stand-in for 1970s Zaire.

 

MONTHS EARLIER, AS OBST was busy with preproduction, her satisfaction was palpable. “Somebody called me ‘Tenacious L,’ which is my favorite name I’ve ever been called,” she says with a laugh. “So you know, it feels pretty gratifying. Pretty damn gratifying.”

Within arm’s reach in her office was the final version of the contract with Preston from decades ago.

“I keep it on my bulletin board,” she says. “There are many colleagues I still work with who went through the original crisis of ‘Crisis in the Hot Zone’ with me who are still around now as my peers and allies and friends. And they are having a big laugh.”

Preston says he harbored little hope.

“I had given up,” he says by phone from the East Coast, where he lives near Princeton University. “I really thought it was never going to see the light of day. However, I was aware of one thing—it kind of lingered in the back of my mind—which was Lynda Obst’s vow in her autobiography that if it was the last thing she ever did, she was going to make The Hot Zone. I know Lynda well enough to know that was a blood oath.

“I said to Lynda that this could be described as an odyssey, except Odysseus wandered for 20 years,” Preston says. “Lynda wandered for 25 years. She beat Odysseus.”

In an episode of The Hot Zone, a character played by Grace Gummer (center) tends to a hut of Ebola victims, including a pregnant woman. —Photo by National Geographic/Casey Crafford

In an episode of The Hot Zone, a character played by Grace Gummer (center) tends to a hut of Ebola victims, including a pregnant woman. —Photo by National Geographic/Casey Crafford

 

THOUGH THEY CAME WITHIN months of passing each other on Marston Quad—Obst graduated in the spring of 1972, and Preston arrived that fall—the two did not know each other. They also had overlapping circles in New York, where Preston was a contributor to The New Yorker and Obst had been an editor for The New York Times Magazine before moving west, fixing her eye for a story on the film industry and emerging as a powerful Hollywood producer. Obst even knew Preston’s brother, author Douglas Preston ’78, but didn’t make the connection.

Their memories differ as to when they first realized they were two Sagehens trying to make a movie. Obst remembered it as riding in a car to meet Nancy and Jerry Jaax, central figures in the book, but after hearing Preston’s recollection, “I think he’s right and my memory stinks,” she says. As Preston remembers it, Obst mentioned Pomona in their first conversations on the phone.

“My recollection is that she made a real point of that, that she had researched me,” Preston says. “I liked that. Pomona people have a lot of low-key credibility in the world. Pomona people are extremely smart, by and large. So I immediately knew that Lynda was very well educated in the humanities, and that counts for a lot with me, because I have a doctorate in the humanities, in English, but I write about science.

“Those first phone calls, I found myself admiring her, and I really like to work with people I admire,” Preston says. “I admired her because she already had a fantastic track record as a producer. I admired her because she had succeeded as an editor at The New York Times Magazine and then had seemed to shift effortlessly to the West Coast to becoming a producer. And I admired her for her grittiness, for her willingness to get into a major fight with a huge producer like Arnold Kopelson. And I really didn’t like Arnold Kopelson at all.”

Kopelson. the Academy Award–winning producer of Platoon, died last year at 83, but Obst had long studiously avoided mentioning his name, even in her book. Preston says his conversation with Kopelson wasn’t much of a courtship.

“Kopelson had me on the phone, just a typical, unbelievably typical, cigar-smoking Hollywood producer,” Preston says. “And he goes, ‘Richard, you really only have one question you need to ask of yourself. I am going to make this movie, and the only question you need to answer is whether you want to play with me or not.’”

Kopelson later told The New York Times he made no threats but simply stated his intentions: The result was Outbreak, a movie about a fictional deadly monkey virus called Motaba, minus most of the science and transplanted from labs in suburban Washington, D.C., to small-town California, with a military bomber ordered to obliterate the town of dead and dying before the carrier monkey is found and a cure is created from its blood.

 

THE OFFERS FROM KOPELSON AND OBST, bidding for what was then 20th Century Fox, had been about the same—$100,000 up front and $400,000 if the movie was made. But when Obst and Preston got on the phone, the two Pomona graduates with backgrounds in nonfiction journalism and a passion for science quickly connected.

Obst studied the philosophy of science at Pomona and during a stint in graduate school at Columbia University, and her goal with The Hot Zone as well as in projects involving the late Carl Sagan and Nobel Prize–winning physicist Kip Thorne, both friends, has always been to get the science right. The truth is sometimes scarier than any fiction.

Dr. Nancy Jaax, played by Julianna Margulies, works with a pipette in the pathology lab

In an episode of The Hot Zone, Dr. Nancy Jaax, played by Julianna Margulies, works with a pipette in the pathology lab. —Photo by National Geographic/Amanda Matlovich

“A lot of other producers talk hype. I talk story,” says Obst, who zeroed in on the central figure of Nancy Jaax in her proposal to Preston. “To me, the vital, amazing thing wasn’t the blood and gore in the piece that attracted some producers. It was that there was a woman Army colonel at the core of this who was a heroine, who exposed herself to danger unwittingly by making a salad for her family, oh my God, on the way to work, where she worked in a [Biosafety] Level 4 containment zone on a regular basis, between visiting her kids at gym and soccer. She was my kind of girl. So I saw a movie star. I saw a great part for women. And I’ve pretty much devoted my career to great parts for women, without sort of consciously being aware of it.”

Kopelson never had a chance.

“I didn’t like the way he had treated me or handled me,” Preston says. “And I found Lynda to be like—this is an odd thing to say, but I felt like she was a kind of samurai, and that she was an expert in martial arts with regard to film production, and that it was just very, very good to have someone like that behind the project.

“I felt like we were two Pomona people going into battle together. And I loved the idea it was a woman warrior. I just loved that.”

But The Hot Zone, the movie, was not to be.

Foster and Redford are both directors as well as actors, and both had strong ideas about the script. Preston thought the original script needed only a little work, and he favored the sensibilities of Foster, who has a degree in literature from Yale. He says Redford wanted to enhance his role by adding an affair with Foster’s married character, Nancy Jaax, and ordered his own rewrite. Foster pulled out of the project over script issues first, and after Meryl Streep considered it before signing on to The Bridges of Madison County, Redford pulled out too. Cameras were rolling for Outbreak. There would be no room in theatres for two monkey virus thrillers at the same time. It was over.

Preston saw Outbreak and calls it “a ridiculous, idiotic film, through no fault of the actors.” (The cast included Dustin Hoffman, Rene Russo, Morgan Freeman, Donald Sutherland, Kevin Spacey and Cuba Gooding Jr.)

Preston says Hoffman called Peter Jahrling, the scientist who discovered the Ebola-Reston virus, in the middle of the night while the film was shooting. “This is a true story,” Preston says. “It goes like this, ‘Ah, is this Dr. Peter Jahrling? Ah, this is Dustin Hoffman. Listen, I’m sorry to bother you, Dr. Jahrling. I’ve got Rene Russo, she’s dying of Ebola, very attractive lady I will say, and we need to cure her in five minutes of screen running time. What do I do, Dr. Jahrling?’”

Jahrling explained a possible cure, Preston says, and at the end of Outbreak, Russo is given an IV bag “of something that looks like Tang breakfast drink, and it cures her in five minutes,” Preston says. “So Jahrling says, ‘I gave them their ending, and they never paid me a dime.’”

Obst, however, refused to watch Outbreak.

“It made me too angry,” she says.

The Hot Zone had come to a painful end, or so it seemed.

“People involved in the project were calling me up and basically weeping over the telephone,” Preston says. But in the end, he adds, “the screenplay was so wretched that it was a relief just to see it put out of its misery.”

 

BY 2014, THE LANDSCAPE HAD CHANGED. Ebola emerged again in West Africa in an epidemic that ultimately killed more than 11,000 from 2013 to 2016, and health officials are currently battling a new outbreak in the Democratic Republic of Congo.

What’s more, Ebola arrived in U.S. hospitals in 2014, borne by international flights. Two men who traveled from West Africa after contracting the virus, one of them a doctor, died of Ebola. Two nurses treating a dying patient in Dallas also contracted the virus but survived, as did seven other patients treated in the U.S. The Ebola threat was no longer far away in Africa.

Liam Cunningham as Wade Carter and Julianna Margulies as Dr. Nancy Jaax during production of The Hot Zone in Toronto

Liam Cunningham as Wade Carter and Julianna Margulies as Dr. Nancy Jaax during production of The Hot Zone in Toronto —Photo by National Geographic/Amanda Matlovich

But something else had changed, Obst says: Television entered a golden age. Even Jerry and Nancy Jaax, central figures in Preston’s book, were amazed when the production came together after all this time. “They’d given up on it,” Obst says. “They all think I’m a miracle worker. But the truth is that I’m not a miracle worker: Media has changed. Television grew up, became great, and we were able to take advantage of that.”

Though she says the outbreaks are only a coincidence, they make the series resonate.

“Unfortunately, Ebola did not go away, but Ebola showed its ugliest head in Sierra Leone, became the outbreak that was warned about in Richard Preston’s book, and then simultaneously, this venue developed called ‘Nat Geo,’ in which you could do these things called limited series, which we used to call miniseries, but they were shorter,” she says. “These are at least double the length. And in this venue, you can do the real science.”

Because Fox—now part of Disney after the Hollywood megadeal—owned the intellectual property as well as the National Geographic Channel, Obst saw a way to do the series under the Fox umbrella, and with Ridley Scott’s television production company, Scott Free. “It got to be a better show than it would have been as a movie,” she says.

Preston agrees. “There’s been a sea change in how television series are made and produced and distributed. It’s the Netflix phenomenon,” he says. “The whole story of The Hot Zone has always lent itself to television far better than to a two-hour feature film. You just can’t get the story into a two-hour feature film and preserve the muscularity and the drama of the story.”

Far from the familiar Hollywood scenario in which writers sign away the rights to their work and watch helplessly as it takes a form they never imagined, Preston became deeply involved in the National Geographic series.

“He’s a very important part of the brain trust,” Obst says.

As a co-executive producer and consultant, Preston not only served as a liaison between the production and the real-life characters;he also was a fact-checker on the science, working closely with showrunners Kelly Souders and Brian Peterson on the scripts.

He went through the episodes line by line with them, “getting down to the nitty-gritty of the science,” Preston says. “The end result is that the audience is going to see something that really feels authentic. It’s like you go onto a car lot, you want to buy a car, and you slam the door and nothing rattles.”

Preston also made suggestions to make the series more realistic or dramatic. In one scene where Jaax puts on a protective biohazard space suit as she and a soldier prepare to go into Biosafety Level 4—the extraordinarily dangerous containment area for lethal viruses for which there is no vaccine and no cure—Preston flashed back to his own experience.

“I’m not going to tell you what it is, but it’s what they did to me the first time I went in with a space suit on,” he says. “I told Kelly and Brian about that. I said, ‘This is what Nancy Jaax is going to do to this soldier,’ and they go, ‘Oh my God, yes.’”

With the Hot Zone television series likely to boost sales of the original book, Preston went to work on a revised edition, with scientific updates reflecting what is now understood about Ebola and related viruses that wasn’t available when he wrote the book, including exactly what killed the Danish boy known by the pseudonym of Peter Cardinal, who became ill after entering Kenya’s Kitum Cave.

Slight additional revisions refine the gruesome descriptions of victims’ bleed-outs, a part of the book Stephen King called “one of the most horrifying things I’ve ever read in my whole life.”

And although Preston has written other books in the interim, his next book, Crisis in the Red Zone, is a successor to The Hot Zone and will be published by Random House in July.

“I don’t want to give away too much, but it’s about emerging viruses—viruses coming out of natural ecosystems and invading the human species,” he says.

The original Hot Zone will come to life not on the silver screen but on the small screen, opening May 27 with a three-night run. Like the lethal virus itself, the project retreated and re-emerged, perhaps a stronger version of itself.

The final words of Preston’s book The Hot Zone now seem doubly prophetic:

“It will be back.”

Anatomy of an Outbreak

Anatomy of an Outbreak pane
Matt Wise ’01

Photos by Dustin Chambers

ON A SWELTERING Monday afternoon last September, a few minutes before 3 o’clock, Matthew Wise ’01 hustled down the hall from his office to a windowless conference room at Atlanta’s Centers for Disease Control and Prevention (CDC) headquarters. Nearly three dozen scientists had crammed in there for the weekly meeting. At the head of the table, Wise slid into his swiveling chair, trying his best not to wrinkle his neatly pressed commander’s uniform.

His team of epidemiologists soon fired off one-minute updates of roughly 30 different food-borne illness outbreaks. He stared at a giant flat-screen filled with bar charts, hoping to triage minor threats from the major ones. Cyclospora outbreak caused by vegetable trays? Fully contained. Listeria linked to deli ham? Under control. Then came the details of a cluster that demanded his full attention: more than 60 infections caused by Salmonella Newport across the western U.S. He could see that the bacteria strain had slowly spread across the country and was sending dozens of people to the hospital.

A member of the U.S. Public Health Service Commissioned Corps, Wise had climbed the ranks of the CDC thanks to his skill as a disease detective. Now a senior official with the federal agency’s Outbreak Response and Prevention Branch, he had the power to act swiftly and decisively. If he made the right choice, he might prevent thousands more from falling ill or even dying. But act too slowly or too fast—particularly by lobbying for a recall—and his team might expose the CDC to the ire of industry and the public at large.

Weighing his options, Wise figured this Salmonella strain was trickier than most. That’s because a new wave of food-borne illnesses had swept the nation in recent years. Unlike traditional outbreaks—which ended nearly as fast as they began—cases were unfolding over longer periods and wider distances. Wise also sensed that these Salmonella infections were the tip of the iceberg. As a general rule of thumb, only one in every 30 people affected by a food-borne illness typically reported being sick. The well-being of thousands of people was likely at stake.

Identifying the outbreak pattern was the easy part. The hard part—discovering the source of the Salmonella—came next. To do so would require a small army of nearly 250 people from more than three dozen agencies. Investigators would ask fathers who’d just left the hospital to recall what they’d recently ordered for dinner. They’d also persuade mothers to search their purses for grocery store receipts. Instead of charging full speed ahead with an investigation, Wise wondered if the agency’s best shot at solving this mystery was to look back to a previous investigation the year before that had gone unsolved. Perhaps an older clue—a fingerprint—might crack open this case.

 

 Matt Wise ’01NINETY-SEVEN PERCENT of America’s food-borne outbreaks are confined to a single source in a single state. Wise says these kinds of outbreaks can be caused by anything from chicken at a church supper left uncovered for too long to a fast-food restaurant kitchen forgetting to wash lettuce. When a food outbreak occurs, he said, local and state health inspectors are usually the ones handling the response.

The other 3 percent of outbreaks are the ones that wreak havoc on America’s health systems. Of the food-borne outbreaks reported to the CDC, they’re responsible for a 10th of the reported sicknesses, a third of the hospitalizations, and more than half of the deaths.

It’s the job of the Outbreak Response and Prevention Branch to spot an outbreak that crosses state lines and, once it does, to help guide the national investigation. Officials of the branch are sort of like agents of the Federal Bureau of Investigation. Except, instead of tracking serial killers, they’re tracking killer lettuce.

To understand food investigations, according to Wise, you need to know how food production has changed in recent decades. Not only is food being produced by fewer companies—thanks to increased consolidation—it is also traveling longer distances to reach consumers. Because of that, Wise says parts of his branch’s job have grown increasingly tough, with outbreaks now spanning the entire nation. But the challenges have also bred opportunity: The CDC is helping reshape how state and federal agencies respond to pathogens such as Salmonella, E. coli and Listeria.

In a given year, Wise’s epidemiologists will have 200 potential cluster outbreaks. Before one crosses his desk, several steps must be taken. First, when a person gets seriously ill from a potential food-borne illness, a doctor collects a stool sample for testing at that hospital’s clinical lab. A technician will then isolate the bacteria and ship the sample to a laboratory that’s part of PulseNet, a network of more than 80 labs, to create a DNA fingerprint. That fingerprint is sent off to a CDC lab in Atlanta. It will eventually make its way up to Wise’s team, who will analyze patterns of illnesses, connecting each like a detective uses yarn on an evidence board.

“If we see there are people in California and Texas and Illinois that all got sick around the same time, from the same fingerprint, that says to me that people have maybe gotten sick from the same thing,” Wise says. “This lets you pull needles from a haystack and see what they have in common.”

 

THE OLD CLUE WISE thought might be helpful came from a previously unsolved Salmonella Newport outbreak that he had first learned about in late January 2017. By then, roughly four dozen cases with a similar bacterial strain had been identified in California, Arizona and Texas. In just weeks, five times as many states had reported similar strains. Soon, local investigators were dispatched to ask sick people hundreds of questions about their recent food consumption and purchasing patterns. The best Wise could tell, ground beef was the likely culprit.

With a decent hypothesis, Wise’s team sought more data to lead the team toward the contamination’s original source. So they advised local investigators to learn more specifics about how the ground beef had been cooked and consumed. Wise’s team also urged the U.S. Department of Agriculture (USDA), which regulates ground beef, to collect further evidence about whether people had purchased a certain brand of ground beef from a grocery store. By compiling those answers, Wise says, they hoped to be able to trace back the Salmonella. That might lead the USDA to recall a product, close production facilities or persuade a manufacturer to voluntarily take its product off the shelf.

That strategy, it turned out, led to a minor breakthrough. Sick people had been purchasing five-pound chubs of ground beef. One Colorado public health official even collected leftover ground beef from a patient’s home—and it tested positive. Wise and his colleagues eventually realized that the Salmonella outbreak was not just linked to those chubs but also to some dairy cows in New Mexico. At that point, however, they hit a snag: The strain found in cattle couldn’t be connected back to a single slaughterhouse. Questions ran through Wise’s mind: Was the problem with one farm’s cows? Or was there a widespread strain in cattle?

“If it came from 10 states and 10 slaughterhouses, maybe it’s connected, but we’ll do more research,” Wise said. “A lot of the time, we’re looking to see if the same facility produced all of it—if the people who got sick all ate the same thing from the same line, produced in the same hour and at the same facility.”

Wise hoped a new kind of technology would crack open the case. For years, scientists in the PulseNet network had used a technique known as pulsed-field gel electrophoresis (PFGE) to create a fingerprint for a bacteria’s DNA. But PFGE wasn’t precise enough to parse out Salmonella strains that were extremely similar to one another. So epidemiologists struggled with statistical “noise” that made it hard to spot which cases were directly linked to ground beef.

The CDC had recently begun shifting toward a more advanced tool—whole-genome sequencing—which allowed them to reconstruct the genome of each bacteria’s DNA, putting each nucleotide together like the pieces of a jigsaw puzzle. But the CDC hadn’t yet fully rolled out the tool for Salmonella cases in real time. The delayed use of the technology, along with the complexity of the ground beef outbreak, stopped the investigators in their tracks. Of the 106 cases ultimately reported, one person died and 42 people were hospitalized.

Matt Wise ’01“We never figured it out,” Wise said.

 

TWO DECADES AGO when Wise arrived at Pomona College, he was more interested in treating illness than tracing its cause. As a high school student, the Sacramento native grew interested in health care after hearing a talk about San Francisco’s needle exchange. But by his sophomore year, he no longer wanted to pursue a medical degree. “The chemistry classes were disconnected from actual health and medicine,” he said. “And, frankly, I was shitty at organic chemistry.” So his coursework shifted toward social sciences—anthropology, psychology and sociology.

During his sociology of health and medicine course, he was first introduced to the CDC’s Epidemic Intelligence Service, a two-year program for postgraduate fellows who are among the first to respond to public health emergencies. After graduating from Pomona, he was hired as an epidemiologist at Los Angeles County’s public health department. Simultaneously, he worked toward his Ph.D. at the University of California, Los Angeles, which later helped him get accepted into the U.S. Public Health Service Commissioned Corps. He moved to Atlanta but traveled coast to coast, helping to investigate outbreaks in hospitals.

“Investigating outbreaks is like the emergency room of public health,” he said. “You don’t have the luxury to pontificate. In academia, you can obsess over little details for a really long time to get a perfect analysis. I was working in environments where you make real decisions in real time.”

During one of his earliest multistate cases at the CDC—a fatal outbreak of fungal meningitis—Wise was assigned to work with employees from the Outbreak Response and Prevention Branch. Their job seemed fascinating. So in 2013, Wise shifted to that team, where he guided epidemiologists through investigations into food-borne illnesses related to frozen pizza snacks and tahini sesame paste. Last year, he was again promoted—this time to the role of deputy chief of his branch.

Beyond overseeing investigations, he was tasked with speaking to the press and, at times, taming the public’s outrage toward the CDC. He explained the basic functions of the agency, like the fact that it doesn’t usually order recalls, or that outbreak investigations take longer than just a few days. While Wise’s work with food-borne illnesses hasn’t changed his diet—he still eats most things, except for raw sprouts—it has changed the way he sees food systems.

“There’s a huge amount of machinery,” Wise said. “I view food more as a product of these complex and massive systems where, if just a couple of little things go wrong, you can have bad results.”

 

IN LATE SEPTEMBER 2018, weeks after that initial 3 p.m. meeting, Wise finally got to see more data. A familiar suspect—ground beef—was causing more problems.

His epidemiologists had already worked with state health departments to obtain sick patients’ shopper records. But the CDC was once again seeing a “noisy” PFGE pattern, complicating the process of finding a single Salmonella source. This time, however, they could use whole-genome sequencing in real time. The results allowed Wise’s team to see that a third of the initial cases weren’t relevant to this investigation at all. Of the remaining ones, they managed to interview 22 people about their ground beef purchases. Twenty-one said they had consumed ground beef.

“It pulled a signal from the noise,” Wise said. “And it allowed us to definitively say that the [unsolved] outbreak was connected to this one.”

With that information, USDA investigators tracked down more shopper cards and beef grinding logs, which showed that a disproportionate number of cases linked back to several Sam’s Club stores located in Wyoming, Utah and South Dakota. Then, another breakthrough: A beef sample purchased by state officials at a California discount grocery store also contained the same strain. That packaging contained an establishment number—EST. 267—which helped trace back the Salmonella source to a beef plant just outside Phoenix.

In late September, Wise’s team sent over their findings to USDA officials, who then approached the plant’s owners: JBS Tolleson. Faced with the evidence, JBS Tolleson agreed to cooperate with the federal government. Between Oct. 4 and Dec. 4, JBS Tolleson voluntarily recalled more than 12 million pounds of beef products. The recall, one of the largest of its kind ever, impacted hundreds of grocery stores from Florida to Washington.

This past March, Wise returned to the windowless conference room and stared at the TV screen full of charts. When the Salmonella outbreak came up, he could finally see the full damage it had caused. Over a six-month period, more than 400 people had gotten sick in 30 different states. Nearly a quarter had been hospitalized. This time, though, no one died.

Wise breathed easily—but only for a moment. Another outbreak, he knew, would soon be on its way.

The Face of a Pandemic

The Face of a Pandemic pane

Adolfo Sartini

ADOLFO SARTINI WASN’T SUPPOSED TO DIE from the flu. He was 29 years old, healthy and strong; he had answered the draft in 1917 and was picked to work as an Army engineer. And yet, the things that should have protected Sartini actually made him an utterly typical victim of the virus that killed him: the notorious 1918 “Spanish” flu.

Adolfo Sartini

Adolfo Sartini in uniform

Extending over the world in three deadly waves, the 1918 flu infected some 500 million people and killed at least 50 million—as much as 5 percent of the world’s population, though it is hard to pin down a precise figure—placing it among the deadliest pandemics ever recorded. So many died so quickly that cities ran out of coffins. Extra gravediggers were called up by the hundreds, and when there weren’t enough gravediggers, steam shovels came in to dig mass graves for the bodies that were piling up in morgues and on roadsides.

The virus piggybacked on World War I troop movements and was sustained by soldiers’ close quarters, yet it also spread to people and places far removed from the war. And the world was all but defenseless against it: without vaccines, antibiotics or antivirals, patients made do with rest, fluids, fresh air and prayer.

The 1918 flu was a killer, and it was also a puzzle. Unlike most flu strains, which are deadly mostly to the very young and the very old, the 1918 flu disproportionately struck down young adults. Graph typical seasonal flu deaths according to age, and you get a “U” shape, with high mortality among babies on the left and the elderly on the right, and a strong, healthy trough in the middle. But when you plot out deaths from the 1918 flu, you get a “W” instead, with the peak centered near age 28—almost exactly Adolfo’s age when he died.

For decades, researchers have been trying to understand what made young adults like Sartini so vulnerable to this particular flu. Maybe people over 40 had already been exposed to similar strains and built up some immunity, while younger ones were immuno­logically unprepared. Maybe soldiers like Sartini were already weak from other infections, like tuberculosis. Maybe young, healthy people suffered from an overactive immune response—a so-called cytokine storm, named for proteins that help direct the body’s immune response—that damaged their lung tissue and allowed fatal infections to establish themselves. Or maybe it was all of those things at once.

Rows of tents at Emery Hill in Lawrence, Massachusetts, where victims of the 1918 influenza pandemic were treated. —Photo courtesy of the National Archives

Rows of tents at Emery Hill in Lawrence, Massachusetts, where victims of the 1918 influenza pandemic were treated. —Photo courtesy of the National Archives

It’s a puzzle that fascinates Ruth Craig ’74. That’s because Sartini’s story embodies her two life’s passions: molecular biology, which she researched and taught for more than 20 years from her labs at Johns Hopkins University School of Medicine and the Geisel School of Medicine at Dartmouth, and genealogy, which she discovered later on and took up as a second career when she moved from active to emeritus professorship. “The two tracks seem very different but actually intersect,” says Craig, “and that intersection is the flu.”

 

IN 1987, AS A BRAND NEW FACULTY MEMBER at Johns Hopkins University School of Medicine, Craig led a research team that discovered a gene that helps control whether cells live or die. The gene, called myeloid cell leukemia-1, or MCL1, is a member of a family of genes with similar jobs, and their involvement in leukemia surprised cancer researchers—it suggested that cancer isn’t just about runaway cell growth, but also about cells that fail to die when their time is up.

But MCL1’s influence goes beyond cancer, as Craig discovered over the course of many years examining the gene. In 2005, Craig was part of a team led by David Dockrell, an infectious disease researcher at the University of Sheffield, that looked at how MCL1 helps immune cells fight infection. They found that MCL1 makes a protein that helps signal immune cells called macrophages to attack bacteria. The macrophages swallow up the invaders, and they also recruit other immune cells to join their offensive. When levels of the MCL1 protein drop, macrophages get the signal to stand down and die off, taking their infectious “prisoners” with them and calling off the immune attack. The response is exquisitely tunable and can be turned on and off in different kinds of cells with laser precision and speed. But what would happen if, for some reason, it failed to turn off on time?

Craig and Dockrell tried to answer that question. Their team started with mice with an MCL1 gene that caused them to overproduce the MCL1 protein. Then, the researchers gave those mice bacterial lung infections. Mice with the modified gene could not clear the infection. Moreover, their lungs were overwhelmed with inflammatory cells. The macrophages, it seemed, didn’t know when to die—so while the immune system kept up its attack, the bacteria went on multiplying, and the mice got sicker and sicker.

Ruth Craig ’74 and Bob Sartini visit St. Michael Cemetery in Boston, where Spanish flu victim Adolfo Sartini is buried.

Ruth Craig ’74 and Bob Sartini visit St. Michael Cemetery in Boston, where Spanish flu victim Adolfo Sartini is buried.

This is where Craig’s gene intersects with Sartini’s story. That’s because if he was like most flu victims, Sartini didn’t actually die from the flu, but from a bacterial lung infection that set in afterward. Craig wondered: Could he have died—too young, too early—in part because some cells in his body died too late?

 

BOB SARTINI KEEPS HIS GREAT-UNCLE Adolfo’s Army chest in his living room in Vermont; on the wall of his Boston apartment, he hung oval-framed pictures of his grandparents and a memorial certificate from the U.S. Army commemorating Adolfo’s supreme sacrifice in World War I. When his grandfather died, Bob says, the certificate “was basically on the trash heap,” Bob became friends with Craig in the late 1970s, when they worked down the hall from each other at Boston University School of Medicine (Bob, who is now retired, spent his career there), and she had the certificate framed for him as a birthday present. “From then on, it’s been on the wall in my house.”

Bob imagined filling up Adolfo’s old Army chest with “period things,” artifacts that would tell the story of Adolfo’s life, but the family lore was meager. Bob knew Adolfo had followed his brother Eugenio, Bob’s grandfather, from Italy to America. He knew that he had spent time working at a country club in Newton, Massachusetts, before enlisting in the Army, and he knew that Adolfo had died young, of the flu. But he wondered: Why did Adolfo enlist? Did Adolfo know that because he was not a U.S. citizen and had not  w  declared an intention to become one, he was not required to answer the draft? Did he deliberately pass up this exemption so that he could step forward to defend his chosen home? And how to make sense of the irony of a healthy soldier being struck down not by shells or machine guns but by something as mundane and typically benign as the flu?

Ruth Craig ’74 places flowers on the grave of Adolfo Sartini, who died of the Spanish flu in 1918.

Ruth Craig ’74 places flowers on the grave of Adolfo Sartini, who died of the Spanish flu in 1918.

Bob wondered about this off and on over the years, going so far as to contact the National Military Personnel Records Center, but they could offer no help: Adolfo’s records had burned up in a 1973 fire that destroyed more than 16 million Army and Air Force personnel files.

Then, around 2013, Craig mentioned that she was working on becoming a certified genealogist and needed a project—something specific and preferably something in Massachusetts, where, unlike New Hampshire, birth and death records weren’t kept sealed. Adolfo seemed perfect.

Craig began by tracking down the register for the ship that brought Adolfo to America. The register listed his birthplace in a farming region of Italy. Then, from her desk at Dartmouth, she pored over digitized images of 19th-century Italian record books. Finally, she found Adolfo’s birth record and birthdate: Feb. 8, 1889.

But what Craig really wanted to find was his death certificate. Not sure where to look next, she posted to an online military history forum, where an expert in World War I history pointed her to a military base that trained engineers, Camp A.A. Humphreys, in Virginia. A search of Virginia death records confirmed it: Adolfo died at the Virginia training camp, far from home and far from the front lines, of a sickness that was one thing that the broken world had in common.

While Craig was searching genealogical records, she was also poring over the scientific literature on the flu, hoping to answer the question that was rising up in her mind: Why did it kill someone like Adolfo?

Soldiers parade in front of the Carnegie Building on Armistice Day, Nov. 11, 1918, wearing surgical masks to protect themselves from the Spanish flu.

Soldiers parade in front of the Carnegie Building on Armistice Day, Nov. 11, 1918, wearing surgical masks to protect themselves from the Spanish flu.

The Spanish Flu at Pomona

It was Nov. 11, 1918—Armistice Day. The global catastrophe that was World War I was finally over, and people everywhere were celebrating. But as soldiers paraded down College Avenue in Claremont, it wasn’t hard to see that the celebration was tempered by worry and caution. Every man in the parade was wearing a white surgical mask to protect himself from the scourge that was striking down the young and fit across the country.
But whether through luck or caution, the pandemic claimed only one life on the Pomona campus. A previously healthy young woman named Viola Minor Westergaard, the wife of Pomona faculty member Waldemar Westergaard, succumbed during the final throes of the epidemic, on Jan. 7, 1919. Viola’s parents later donated a collection of books and other items to Honnold-Mudd Library in her honor, including a bust of her face by artist Burt Johnson.
—Mark Wood

Bust of Viola Westergaard, the only victim of the Spanish flu on the Pomona campus

Bust of Viola Westergaard, the only victim of the Spanish flu on the Pomona campus

Flu viruses are always changing, accumulating small genetic mutations and, once in a while, making more radical shifts that constitute entirely new flu subtypes—not just variations on a theme but fresh, unfamiliar melodies. This year-to-year change explains why getting the flu this year doesn’t mean you’ll be protected against it next year. It also helps explain why older people are sometimes spared the worst of a flu that seriously sickens younger ones: Their immune systems remember similar strains that circulated decades ago and can mount some defense, even if it is an imperfect one.

For instance, some 80 percent of those who died from the 2009 “swine flu” pandemic were under 65—turning the expected mortality statistics for seasonal flus on their head. Why were younger people  w  likelier to get sick and die of swine flu? Researchers think that older people had been exposed to similar flus, including the 1918 flu, in the early 20th century, and therefore had some protection against the 2009 version.

Yet that can’t completely account for the 1918 flu’s W-shaped curve and the peculiar vulnerability of those who were born around 1889, like Adolfo. Craig’s search brought her to mathematician David Earn, who studies mathematical biology at McMaster University in Canada. Earn and his colleagues have explored the possibility that a person’s very first flu—the one he or she encounters as a baby—makes a more powerful impression on the immune system than any other. This hypothesis, called “antigenic imprinting,” goes back to the 1950s and offers an appealingly parsimonious explanation for the W-shaped curve. If it is correct, Earn wrote, it means that your risk of dying from the flu has everything to do with the biological “distance” between your first flu and the one you happen to be sick with right now.

 

IN THE FALL OF 1889, a new flu broke out in St. Petersburg, Russia. Quickly, the flu spread west. (It may have actually already made its way through India and Central Asia before being reported in Russia.) Though it wasn’t as deadly as the 1918 flu, the flu of 1889 and 1890 is recognized as the first pandemic of the connected world. Extensive railroads linked the countries of Europe, and the United States was less than a week away by boat. In just four months, the “Russian flu” had gone full circle around the world. Little Adolfo was probably exposed when the flu hit Italy in 1890; he was not yet one year old.

“If the hypothesis is correct, Adolfo’s immune system was imprinted by the pandemic of ’89–90,” says Craig. When the 1918 flu, which was presumably a different subtype, came along, his body tried to fight it off, but brought the wrong weapons: “His body was responding, but it was primed to respond to the other flu. It didn’t deal well with the flu that he encountered in 1918.”

Pandemic’s Progress

Maps prepared by Ruth Craig ’74 and colleagues James Adams and Stephen Gaughan show how the Spanish flu hopscotched through military bases to blanket the country in barely a month, from late August to the end of September.

To test this hypothesis, Alain Gagnon, a professor of demography at the University of Montreal, along with Earn and other colleagues, looked for similar mortality patterns in other flu pandemics. Their results suggest that the 1918 flu was not unique: People born near the time of the 1918 pandemic were likelier to die during a 1957 “Asian flu” pandemic, and people born during that outbreak, in turn, were at greater risk during the 2009 swine flu pandemic.

A study published in Science in 2016 gave new support to the imprinting hypothesis. In that study, researchers looked at flu infection data from China, Egypt, Cambodia, Indonesia, Thailand and Vietnam. They figured out the “first flus” for every birth year between 1918 and 2015 and then compared that data against flu illnesses and deaths for two different flu types. Just as the imprinting hypothesis predicted, people were more likely to get seriously ill or die from flu subtypes that were very different from their first flu.

These correlations are suggestive, but they aren’t conclusive, points out immunologist Matthew Miller, who collaborates with Gagnon and Earn at McMaster. “We see it in epidemiological data, but there’s still not a biological explanation of what’s causing that to happen.” And the epidemiological data still leave key questions open: Perhaps the critical flu exposure happens before a baby is even born, says Miller, when a pregnant woman is infected with flu, sapping her body of resources that would normally be directed to the developing fetus. Or perhaps being exposed to any virulent disease as a baby imparts a lifelong fragility, normally invisible, that makes a person more vulnerable to future illness of any kind. Miller and his colleagues are currently working on testing these ideas.

Yet Miller can sketch out a rough story of what might have happened to Adolfo and other young-adult victims of the 1918 flu, if the “first flu” imprinting hypothesis is correct. “People who were exposed to the 1890 virus would have made antibodies against that virus and T-cells against that virus,” says Miller, describing proteins and immune cells that fight off infections. When the 1918 flu came around, their bodies could have responded with a rush of antibodies and T-cells that “remembered” the earlier flu. But the defensive assault might backfire: The mismatched antibodies would be ineffective, and the T-cells could run riot, making the victim sicker and sicker.

There may be no single explanation for what made young people like Adolfo Sartini so vulnerable in 1918; imprinting probably combined with other factors to create a particularly deadly risk profile. After all, most people who got the 1918 flu, even those born around 1889 and 1890, recovered just fine.

But in Adolfo’s story, Craig sees the shadow of MCL1 and wonders: Did MCL1 help his immune cells “remember” the Russian flu, and did that memory make it harder for him to clear the lung infection that took his life? Did it help unleash a deadly cytokine storm?

To Dockrell, it’s plausible that, at a minimum, Adolfo’s childhood infection with Russian flu may have made him more susceptible to complications of Spanish flu. In fact, in still-unpublished research, Dockrell and his colleagues have found that the flu virus can dial up MCL1 in lung cells, possibly making them more vulnerable to bacterial infections like pneumonia.

“This is total speculation, but in my mind the immune imprinting hypothesis and the cytokine storm hypothesis are not mutually exclusive,” Craig says. “They could both have been at work in 1918.”

Whatever made the 1918 pandemic so deadly, one thing is clear: There will be a next time. And the more researchers know about what happened in 1918, the better prepared we will be to protect ourselves from future pandemics.

AFTER ADOLFO DIED IN VIRGINIA, his body was brought back to Boston, and he was buried at St. Michael Cemetery, a largely Italian cemetery about five miles south of downtown Boston and a few miles west of the Atlantic shoreline. On a chilly day in March, Craig and Bob met there and found Adolfo’s grave, which is packed close with others dated 1918: young children, elderly people, and many in the prime of life, like Adolfo.

A century later, memories of the 1918 flu are mostly like this—gravestones, fading certificates, old Army trunks. But among the headstones at St. Michael, Adolfo’s stands out. It is a granite cylinder carved with winding vines. At the top, it is cut rough. To Craig, it looks like a toppled column: a monument to a life built up and struck down. But the granite is surprisingly smooth, and the flowers she lays are fresh.

The story could begin again tomorrow.

Creating Answers

Creating Answers pane

Most of the research projects undertaken by students at Pomona, with the support of or in collaboration with faculty members, are of the kind known as “pure research”—that is, their aim is to add new knowledge to a field of study, not to pursue a specific application. Occasionally, however, those projects cross over into “applied research,” aimed at solving a specific problem in the real world. The following are illustrations of three such projects, all aimed at finding new solutions to problems in medicine or mental health.

Diagnosis by Breath

View the full, two-page Diagnosis by Breath infographic as it appeared in the print edition.

For centuries, medical practitioners have been able to diagnose certain ailments simply by smelling the patient’s breath. That, says Professor of Chemistry Chuck Taylor, is due to volatile organic compounds (VOCs) that, when breathed out, provide an identifiable signature of the guilty pathogen. That’s what led Taylor to think about the problem of hospital-acquired pneumonia, which is particularly deadly among intubated patients. Would it be possible, he wondered, to create a diagnostic tool that uses those VOCs to detect infections—and to identify the specific bacteria involved—so that they can be treated in a timely fashion? Since then, Taylor and students in his lab have been hard at work creating the knowledge base for developing such a tool. Eric Garcia ’19 is one of the many students who, in recent years, have helped move this research project forward. Eric’s role has been to try to understand the properties of certain lens-coating polymers that also happen to be very good at absorbing airborne VOCs so that they can be released for testing. There’s a lot of work still to be done, but here’s how Taylor and his students hope it might eventually work:

A bacterium such as Staphylococcus aureus infects the lungs of an intubated patient and begins to release signature VOCs.A bacterium such as Staphylococcus aureus infects the lungs of an intubated patient and begins to release signature VOCs.

Some of those VOCs are trapped in a filter in the patient’s breathing line.
Some of those VOCs are trapped in a filter in the patient’s breathing line.

The filter is replaced daily and taken for testing.The filter is replaced daily and taken for testing.

The VOCs are released from the filter and tested in a Raman spectrometer, revealing the VOC signature for S. aureus.The VOCs are released from the filter and tested in a Raman spectrometer, revealing the VOC signature for S. aureus.

A doctor gives the patient an antibiotic known to be effective against the identified bacterial strain in time to save a life.A doctor gives the patient an antibiotic known to be effective against the identified bacterial strain in time to save a life.

Eric Garcia ’19 and Professor Chuck TaylorFrom left: Eric Garcia ’19 and Professor Chuck Taylor

Autism and Virtual Reality

View the full, two-page Autism and Virtual Reality infographic as it appeared in the print edition.

With a sister on the autism spectrum, neuroscience major Cynthia Nyongesa ’19 has a long-held interest in the widespread neurological condition, which affects the way a person interacts with the world. So when she read about the effectiveness of virtual reality (VR) therapy in a range of other conditions, she wondered if autism could be added to the list. Working with the Center for Autism and Neurodevelopmental Disorders in Santa Ana, California, and with the support of Neuroscience Professor Richard Lewis, she has developed a pilot study to find out. The advantage of VR therapy, Nyongesa says, is that its totally immersive environment can be used to simulate realistic scenarios that couldn’t be used in the real world. “Like going through airport security, for example,” she says. “You couldn’t physically take a subject through TSA—you couldn’t get approval for something like that—but you can simulate it in VR.” And to determine whether the therapy is working, she plans to use before-and-after brain scans to show whether key parts of the brain are more active. Here’s how the study might work:

The subject undergoes an evaluation, including brain imaging, to measure brain activity in key areas of the brain associated with autism.

The subject undergoes an evaluation, including brain imaging, to measure brain activity in key areas of the brain associated with autism.

Over the course of several sessions, the subject dons VR equipment programmed to provide an immersive, simulated experience.

Over the course of several sessions, the subject dons VR equipment programmed to provide an immersive, simulated experience.

Each VR experience requires the subject to interact in realistic situations that challenge the parts of the brain dealing with such functions as social interaction and emotion recognition.

Each VR experience requires the subject to interact in realistic situations that challenge the parts of the brain dealing with such functions as social interaction and emotion recognition.

A final brain scan, along with behavioral testing, measures whether the therapy has resulted in increased activity in those key areas of the brain.

A final brain scan, along with behavioral testing, measures whether the therapy has resulted in increased activity in those key areas of the brain.

Cynthia Nyongesa ’19 and Professor Richard LewisFrom Left: Cynthia Nyongesa ’19 and Professor Richard Lewis

Depression and Social Media

View the full, two-page Depression and Social Media infographic as it appeared in the print edition.

Caroline Chou, a Claremont McKenna College senior completing her major in Pomona’s computer science program, knew she wanted to do her senior thesis on a subject that incorporated health and computer science. Based on prior research showing a connection between certain indicators in social media and an episode of depression, Chou wondered if she could use social media to create an app-based support tool for therapists, psychiatrists and other health professionals who are working with people suffering from depressive disorder. With the support of Pomona College Assistant Professor of Computer Science Alexandra Papoutsaki, Chou spent the last semester designing the various interfaces of an app that would, when completed, provide an analysis of public portions of a patient’s Twitter usage, giving the clinician a heads-up to possible depressive episodes. Here’s a fictitious scenario showing how it might work:

Dr. Kay recommends that his patient, Josie, use the app to analyze depression-related patterns in her Twitter usage.

Dr. Kay recommends that his patient, Josie, use the app to analyze depression-related patterns in her Twitter usage.

Dr. Kay logs in to look at the patient’s monthly report for January and sees a spike in depression-related indicators during the second week of the month.

Dr. Kay logs in to look at the patient’s monthly report for January and sees a spike in depression-related indicators during the second week of the month.

During Josie’s regular therapy session, Dr. Kay uses the report to jog the patient’s memory about significant events of that particular week.

During Josie’s regular therapy session, Dr. Kay uses the report to jog the patient’s memory about significant events of that particular week.

Josie tears up as she remembers that week, when her dog was seriously ill, and as a result, her therapy session becomes more productive.

Josie tears up as she remembers that week, when her dog was seriously ill, and as a result, her therapy session becomes more productive.

Professor Alexandra Papoutsaki and Caroline Chou (CMC ’19)From left: Professor Alexandra Papoutsaki and Caroline Chou (CMC ’19)